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Dropped to single user mode and ran /sbin/fsck -f -y (-f due to journaling being active) and it ran cleanly twice.
Rebooted to MU mode and ran Super Duper again, failed on the same file. I am tempted to delete it (it's a man page source file for generating a DSA key of some sort) but that seems to be masking an underlying problem. I don't have my install disk for Jaguar here, so I am running fsck rather than the DU app.
I guess in the meantime I'll go on a "cruft hunt" and clean up my disk for the install if I ever get the disk backed up. :-)
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