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I did this for a number of years in my former job, and after trying the various options, I think there is one even better than the one you suggest. I used the same portable FW drive you are taking back and forth, but rather than clone repeatedly, etc., I just used the FW drive as the OS drive at both ends. Yes, you then have to boot twice a day (start of day in office, and when first getting home) but you never have to clone, worry about did you remember to clone/update, etc.
I found this a far better and easier solution than trying to keep all three locations (home, office and transport disk) identical. (Obviously, this won't work for lots of people with company networks at work, etc., but if your two machines are truly identical, as you say, it will.)
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