I don't know of any cases where SuperDuper! would cause fonts to go missing, rcs... and since there are a ton of dfonts on a typical system we'd certainly have seen it!
So -- if the fonts are in /Library Fonts, and not in ~/Library/Fonts, that sounds right... that's where they'd be. There's no reason for them to move to ~/Library/Fonts.
Are they on the backup? In other words, if you look at /Library/Fonts on the backup, are the fonts there -- where they're supposed to be?
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--Dave Nanian
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