If you could, please send me the system.log from the system that's failing to boot. You'll find it in /private/var/log/system.log on the volume that you copied to: use "Go To Folder" in Finder, followed by /Volumes/the-drive-name/private/var/log to get there.
Send that to the support address via email and I'll take a look (this should be after it's failed to boot, don't re-clone before sending me the log).
Thanks!
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--Dave Nanian
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