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OK, it's fixed but it's weird ...
I just noticed the forum has a "similar threads" feature and found DN's "I just wanted to copy a single folder but it copied the whole drive". I tried adding
ignore .*
so now the commands are
ignore *
ignore .*
copy ToBackup
and now it works perfectly. But why?? The problem was not that it was copying some of the hidden files but that it was copying a bunch of other folders with normal names.
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